RNA-seq data preparation

Code available at: https://github.com/poldrack/myconnectome/blob/master/myconnectome/rnaseq/RNAseq_data_preparation.Rmd

This code loads the gene-level read count data and performs a variance-stabilizing transform using DESeq, and saves the resulting data for further analysis.

Dispersion estimates

plot of chunk plotDispEsts

SD vs. count before and after correction

plot of chunk plotSD

Clusters of genes/sessions

plot of chunk plotClustGenes

Clusters of sessions - to look for outliers

plot of chunk plotClustSessions